The emerging three degree of freedom plus (3DoF+) video provides more interactive and deep immersive visual experience. 3DoF+ video introduces motion parallax to 360 video providing omnidirectional view with limited changes of the view position. A large set of views are required to support such 3DoF+ visual experience, hence it is essential to compress a tremendous amount of 3DoF+ video. Recently, MPEG is developing a standard for efficient coding of 3DoF+ video that consists of multiple videos, and its test model named Test Model for Immersive Video (TMIV). In the TMIV, the redundancy between the input source views is removed as much as possible by selecting one or several basic views and predicting the remaining views from the basic views. Each unpredicted region is cropped to a bounding box called patch, and then a large number of patches are packed into atlases together with the selected basic views. As a result, multiple source views are converted into one or more atlas sequences to be compressed. In this letter, we present an improved clustering method using patch merging in the atlas construction in the TMIV. The proposed method achieves significant BD-rate reduction in terms of various end-to-end evaluation metrics in the experiment, and was adopted in TMIV6.0.