The design and performance evaluation is presented of a partially adaptive array that suppresses clutter from low elevation angles in atmospheric radar observations. The norm-constrained and directionally constrained minimization of power (NC-DCMP) algorithm has been widely used to suppress clutter in atmospheric radars, because it can limit the signal-to-noise ratio (SNR) loss to a designated amount, which is the most important design factor for atmospheric radars. To suppress clutter from low elevation angles, adding supplemental antennas that have high response to the incoming directions of clutter has been considered to be more efficient than to divide uniformly the high-gain main array. However, the proper handling of the gain differences of main and sub-arrays has not been well studied. We performed numerical simulations to show that using the proper gain weighting, the sub-array configuration has better clutter suppression capability per unit SNR loss than the uniformly divided arrays of the same size. The method developed is also applied to an actual observation dataset from the MU radar at Shigaraki, Japan. The properly gain-weighted NC-DCMP algorithm suppresses the ground clutter sufficiently with an average SNR loss of about 1 dB less than that of the uniform-gain configuration.